Index A | B | C | E | F | G | H | I | L | M | N | P | R | S | T | U | V | W | Z A accept_series() (in module genetools.stats) add_sample_size_to_labels() (in module genetools.plots) add_sample_size_to_legend() (in module genetools.plots) alpha (genetools.palette.HueValueStyle attribute) apply_defaults() (genetools.palette.HueValueStyle method) apply_pipeline_transforms() (in module genetools.helpers) B barcode_split() (in module genetools.helpers) C clr_normalize() (in module genetools.scanpy_helpers) (in module genetools.stats) coclustering() (in module genetools.stats) color (genetools.palette.HueValueStyle attribute) ConfusionMatrixValues (class in genetools.stats) convert_matrix_to_one_element_per_row() (in module genetools.arrays) convert_palette_list_to_dict() (in module genetools.palette) E edgecolors (genetools.palette.HueValueStyle attribute) F facecolors (genetools.palette.HueValueStyle attribute) false_negatives (genetools.stats.ConfusionMatrixValues attribute) false_positives (genetools.stats.ConfusionMatrixValues attribute) find_all_markers() (in module genetools.scanpy_helpers) from_color() (genetools.palette.HueValueStyle class method) G genetools module genetools.arrays module genetools.helpers module genetools.palette module genetools.plots module genetools.scanpy_helpers module genetools.stats module get_off_diagonal_values() (in module genetools.helpers) get_point_size() (in module genetools.plots) get_top_n() (in module genetools.arrays) get_top_n_percent() (in module genetools.arrays) get_trim_both_sides_mask() (in module genetools.arrays) groupby_apply_weighted_value_counts() (in module genetools.arrays) H hatch (genetools.palette.HueValueStyle attribute) horizontal_concat() (in module genetools.helpers) huestyles_to_colors_dict() (genetools.palette.HueValueStyle static method) HueValueStyle (class in genetools.palette) I interpolate_prc() (in module genetools.stats) interpolate_roc() (in module genetools.stats) intersect_marker_genes() (in module genetools.stats) L legend_size_scale_factor (genetools.palette.HueValueStyle attribute) linewidths (genetools.palette.HueValueStyle attribute) M make_confusion_matrix() (in module genetools.stats) make_consensus_sequence() (in module genetools.arrays) make_consensus_vector() (in module genetools.arrays) make_dummy_variables_in_specific_order() (in module genetools.arrays) make_slurm_command() (in module genetools.helpers) marker (genetools.palette.HueValueStyle attribute) marker_size_scale_factor (genetools.palette.HueValueStyle attribute) masked_argmax() (in module genetools.arrays) masked_argmin() (in module genetools.arrays) merge_into_left() (in module genetools.helpers) module genetools genetools.arrays genetools.helpers genetools.palette genetools.plots genetools.scanpy_helpers genetools.stats N normalize_columns() (in module genetools.stats) normalize_rows() (in module genetools.stats) numeric_vectors_to_character_arrays() (in module genetools.arrays) P parallel_groupby_apply() (in module genetools.helpers) pca_anndata() (in module genetools.scanpy_helpers) pca_train_and_test_anndatas() (in module genetools.scanpy_helpers) percentile_normalize() (in module genetools.stats) plot_color_and_size_dotplot() (in module genetools.plots) plot_confusion_matrix() (in module genetools.plots) plot_triangular_heatmap() (in module genetools.plots) plot_two_key_color_and_size_dotplot() (in module genetools.plots) R rank_normalize() (in module genetools.stats) rename_duplicates() (in module genetools.helpers) render_rectangle_props() (genetools.palette.HueValueStyle method) render_scatter_continuous_props() (genetools.palette.HueValueStyle method) render_scatter_legend_props() (genetools.palette.HueValueStyle method) render_scatter_props() (genetools.palette.HueValueStyle method) run_sigmoid_if_binary_and_softmax_if_multiclass() (in module genetools.stats) S savefig() (in module genetools.plots) scale_anndata() (in module genetools.scanpy_helpers) scale_train_and_test_anndatas() (in module genetools.scanpy_helpers) scatterplot() (in module genetools.plots) softmax() (in module genetools.stats) stacked_bar_plot() (in module genetools.plots) strings_to_character_arrays() (in module genetools.arrays) strings_to_numeric_vectors() (in module genetools.arrays) superimpose_group_labels() (in module genetools.plots) T true_negatives (genetools.stats.ConfusionMatrixValues attribute) true_positives (genetools.stats.ConfusionMatrixValues attribute) two_class_relative_density_plot() (in module genetools.plots) U umap_anndata() (in module genetools.scanpy_helpers) umap_train_and_test_anndatas() (in module genetools.scanpy_helpers) unpack_confusion_matrix() (in module genetools.stats) V vertical_concat() (in module genetools.helpers) W weighted_median() (in module genetools.arrays) weighted_mode() (in module genetools.arrays) weighted_value_counts() (in module genetools.arrays) wrap_tick_labels() (in module genetools.plots) Z zorder (genetools.palette.HueValueStyle attribute)